| 1 | | 28 |  Omega Pharma - Quick Step | 04:50:35 |
| 2 | | 21 | Omega Pharma - Quick Step | + 53 |
| 3 | | 29 |  Team Netapp - Endura | " |
| 4 | | 24 |  Bauknecht - Author | + 56 |
| 5 | | 26 | Team Netapp - Endura | + 01:07 |
| 6 | | 23 | Etixx | + 02:36 |
| 7 | | 36 | Bauknecht - Author | + 02:52 |
| 8 | | | | " |
| 9 | | 22 | Etixx | + 02:55 |
| 10 | | 23 |  BMC Development Team | " |
| 11 | | 26 | Team Netapp - Endura | " |
| 12 | | 22 |  Gebrüder Weiss - Oberndorfer | " |
| 13 | | 21 | | + 04:07 |
| 14 | | 22 | Bauknecht - Author | + 06:48 |
| 15 | | 18 | AC Sparta Praha | " |
| 16 | | | | + 06:51 |
| 17 | | 21 | | " |
| 18 | | 39 | Team Dukla Praha | + 07:07 |
| 19 | | 28 | AC Sparta Praha | " |
| 20 | | 21 | Team Dukla Praha | + 11:03 |
| 21 | | 39 | | " |
| 22 | | 26 | ČEZ Cyklo Team Tábor | " |
| 23 | | 19 | | " |
| 24 | | 20 | | " |
| 25 | | 24 | Bauknecht - Author | + 11:11 |
| 26 | | | | + 13:44 |
| 27 | | 25 | Gebrüder Weiss - Oberndorfer | " |
| 28 | | 22 | | + 13:46 |
| 29 | | 22 | | + 13:54 |
| 30 | | 39 | | + 13:57 |
| 31 | | 30 | Gebrüder Weiss - Oberndorfer | + 15:19 |
| 32 | | 36 | Team Dukla Praha | + 15:25 |
| 33 | | 23 | Experiment 23 | " |
| 34 | | 24 | | " |
| 35 | | 25 | | + 15:27 |
| 36 | | 21 | SKC Tufo Prostejov | " |
| 37 | | 30 | | + 15:29 |
| 38 | | 32 | | " |
| 39 | | 30 | | + 15:35 |
| 40 | | 21 | Team Dukla Praha | " |
| 41 | | 21 | | " |
| 42 | | 23 | AC Sparta Praha | " |
| 43 | | 30 | Team Dukla Praha | + 15:41 |
| 44 | | 27 | Team Dukla Praha | + 18:24 |
| 45 | | 21 | AC Sparta Praha | + 21:44 |
| 46 | | 27 | | + 24:07 |
| 47 | | 30 | | + 25:28 |
| 48 | | 33 | | + 29:36 |